Bernardino Romera Peredes – Semantic segmentation for medical images [Video]

On Friday 5th of October 2018 EPiGRAM-HS had the honour of sponsoring Bernardino Romera Peredes's talk on “Semantic segmentation for medical images“. 

Bio: Bernardino Romera-Paredes is a research scientist at DeepMind. He was a postdoctoral research fellow in the Torr Vision Group at the University of Oxford. Previously, he received his Ph.D. degree from University College London in 2014, supervised by Prof. Massimiliano Pontil and Prof. Nadia Berthouze, and also did an internship at Microsoft Research. He has published in top-tier machine-learning conferences such as in Conference on Neural Information Processing Systems (NIPS), International Conference on Machine Learning (ICML), and International Conference on Computer Vision (ICCV), as well as in journals, such as the Journal of Machine Learning Research (JMLR). His research focuses on structure prediction in computer vision, such as semantic and instance segmentation, and on multitask and transfer learning methods applied to vision tasks.

Abstract: Deep learning approaches such as the U-net, have shown a high performance in a wide range of medical image segmentation tasks. However, a deep learning architecture is only one part of building clinically applicable tools. In this talk I will present three projects from DeepMind Health Research addressing these challenges. The first project, a collaboration with University College London Hospital, deals with the challenging task of the precise segmentation of radiosensitive head and neck anatomy in CT scans, an essential input for radiotherapy planning. The second project, together with Moorfields Eye Hospital, developed a system that analyses 3D OCT (optical coherence tomography) eye scans to provide referral decisions for patients. The performance was on par with world experts with over 20 years experience. Finally, I will focus on the third project, which deals with the segmentation of ambiguous images. This is of particular relevance in medical imaging where ambiguities can often not be resolved from the image context alone. We propose a combination of a U-net with a conditional variational autoencoder that is capable of efficiently producing an unlimited number of plausible segmentation map hypotheses for a given ambiguous image. We show that each hypothesis provides a globally consistent segmentation, and that the probabilities of these hypotheses are well calibrated.

Jeffrey Vetter – Exploring Emerging Memory Technologies in Extreme Scale High Performance Computing

On Monday 8th of October EPiGRAM-HS had the honour of sponsoring Jeffrey Vetter’s talk on “Exploring Emerging Memory Technologies in Extreme Scale High Performance Computing“. 

Jeffrey Vetter earned his Ph.D. in Computer Science from the Georgia Institute of Technology. He is a Distinguished R&D Staff Member at Oak Ridge National Laboratory, founding group leader of the Future Technologies Group in the Computer Science and Mathematics Division and the founding director of the Experimental Computing Laboratory. In 2015, Vetter served as the SC15 Technical Program Chair. As part of an interdisciplinary team from Georgia Tech, NYU, and ORNL, he was awarded the ACM Gordon Bell Prize. His recent books, entitled “Contemporary High Performance Computing: From Petascale toward Exascale (Vols. 1 and 2),” survey the international landscape of HPC.